DSGym: A Holistic Framework for Evaluating and Training Data Science Agents
Paper
•
2601.16344
•
Published
•
11
Datasets:
Dataset Viewer
The dataset viewer is not available for this split.
Cannot extract the features (columns) for the split 'train' of the config 'default' of the dataset.
Error code: FeaturesError
Exception: ArrowTypeError
Message: ("Expected bytes, got a 'list' object", 'Conversion failed for column question with type object')
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 160, in _generate_tables
pa_table = paj.read_json(
^^^^^^^^^^^^^^
File "pyarrow/_json.pyx", line 342, in pyarrow._json.read_json
File "pyarrow/error.pxi", line 155, in pyarrow.lib.pyarrow_internal_check_status
File "pyarrow/error.pxi", line 92, in pyarrow.lib.check_status
pyarrow.lib.ArrowInvalid: JSON parse error: Column() changed from object to array in row 0
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/split/first_rows.py", line 243, in compute_first_rows_from_streaming_response
iterable_dataset = iterable_dataset._resolve_features()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 3608, in _resolve_features
features = _infer_features_from_batch(self.with_format(None)._head())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2368, in _head
return next(iter(self.iter(batch_size=n)))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2573, in iter
for key, example in iterator:
^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2060, in __iter__
for key, pa_table in self._iter_arrow():
^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2082, in _iter_arrow
yield from self.ex_iterable._iter_arrow()
File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 544, in _iter_arrow
for key, pa_table in iterator:
^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 383, in _iter_arrow
for key, pa_table in self.generate_tables_fn(**gen_kwags):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 190, in _generate_tables
pa_table = pa.Table.from_pandas(df, preserve_index=False)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "pyarrow/table.pxi", line 4795, in pyarrow.lib.Table.from_pandas
File "/usr/local/lib/python3.12/site-packages/pyarrow/pandas_compat.py", line 637, in dataframe_to_arrays
arrays = [convert_column(c, f)
^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/pyarrow/pandas_compat.py", line 625, in convert_column
raise e
File "/usr/local/lib/python3.12/site-packages/pyarrow/pandas_compat.py", line 619, in convert_column
result = pa.array(col, type=type_, from_pandas=True, safe=safe)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "pyarrow/array.pxi", line 365, in pyarrow.lib.array
File "pyarrow/array.pxi", line 91, in pyarrow.lib._ndarray_to_array
File "pyarrow/error.pxi", line 92, in pyarrow.lib.check_status
pyarrow.lib.ArrowTypeError: ("Expected bytes, got a 'list' object", 'Conversion failed for column question with type object')Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
DSBio: Scientific Analysis Tasks
DSBio is a suite of 90 expert-derived bioinformatics tasks constructed from peer-reviewed academic publications and public scientific datasets.
These tasks are designed to evaluate whether agents can perform domain-grounded scientific analysis, including:
- Interpreting high-dimensional biological data (e.g., single-cell and spatial omics)
- Understanding domain-specific terminology and conventions
- Executing multi-step analytical workflows with specialized libraries
Attribution
If you use DSBio in academic work, please cite our paper:
@misc{nie2026dsgymholisticframeworkevaluating,
title={DSGym: A Holistic Framework for Evaluating and Training Data Science Agents},
author={Fan Nie and Junlin Wang and Harper Hua and Federico Bianchi and Yongchan Kwon and Zhenting Qi and Owen Queen and Shang Zhu and James Zou},
year={2026},
eprint={2601.16344},
archivePrefix={arXiv},
primaryClass={cs.AI},
url={https://arxiv.org/abs/2601.16344},
}
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